Browndye: A software package for Brownian dynamics
نویسندگان
چکیده
منابع مشابه
Browndye: A software package for Brownian dynamics
A new software package, Browndye, is presented for simulating the diffusional encounter of two large biological molecules. It can be used to estimate second-order rate constants and encounter probabilities, and to explore reaction trajectories. Browndye builds upon previous knowledge and algorithms from software packages such as UHBD, SDA, and Macrodox, while implementing algorithms that scale ...
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ژورنال
عنوان ژورنال: Computer Physics Communications
سال: 2010
ISSN: 0010-4655
DOI: 10.1016/j.cpc.2010.07.022